Assignment: GS540 HW9
Name: {YOURNAME}
Email: {YOUREMAIL}
Language: {YOURLANGUAGE}
Runtime: {YOURTIME}

State Histogram:
1=5
2=3

Segment Histogram:
1=2
2=1

Initial State Probabilities:
1=0.90000
2=0.10000

Transition Probabilities:
1,1=0.99000
1,2=0.01000
2,1=0.20000
2,2=0.80000

Emission Probabilities:
1,A--=0.20000
1,A-A=0.20000
1,A-C=0.20000
1,A-G=0.20000
1,A-T=0.20000
.
.
.
2,A--=0.10000
2,A-A=0.20000
2,A-C=0.25000
2,A-G=0.25000
2,A-T=0.20000
etc..

Longest Segment List:

116741000 116752000
116745000 116756000
etc.. (give 10 longest from state 2)

Annotations:

Start: 116741000
End: 116752000
Overlaps with exon3 of the protein coding gene cMyc

Start: 116745000
End: 116756000
Overlaps with exon4 of the protein coding gene cMyc

etc.. (give 5 longest)


Program:

int main() {
	do_analysis();
	return 0;
}